Vanderbilt University
Vanderbilt University
  • Our recent paper: Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter
  • Mchaourab lab - Overview
  • Sampling the conformational landscapes of transporters and receptors with AlphaFold2
  • Modeling Alternate Conformations with Alphafold2
  • Our work in Science!
  • Molecular Basis of Genetic Diseases program highlights
Vanderbilt University
  • Our recent paper: Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter
  • Mchaourab lab - Overview
  • Sampling the conformational landscapes of transporters and receptors with AlphaFold2
  • Modeling Alternate Conformations with Alphafold2
  • Our work in Science!
  • Molecular Basis of Genetic Diseases program highlights
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  • Conformational cycle of the ABC transporter MsbA in liposomes: detailed analysis using double electr…

    Conformational cycle of the ABC transporter MsbA in liposomes: detailed analysis using double electr…

    Driven by the energy of ATP binding and hydrolysis, ATP-binding cassette transporters alternate between inward- and outward-facing conformations, allowing vectorial movement of substrates. Conflicting models have been proposed to describe the conformational motion underlying this switch in access of the transport pathway. One model, based on three crystal structures of… Read More

    Jul. 23, 2020

  • Structure and mechanism of protein stability sensors: chaperone activity of small heat shock protein…

    Structure and mechanism of protein stability sensors: chaperone activity of small heat shock protein…

    Small heat shock proteins (sHSP) make up a remarkably diverse group of molecular chaperones possessing a degree of structural plasticity unparalleled in other protein superfamilies. In the absence of chemical energy input, these stability sensors can sensitively recognize and bind destabilized proteins, even in the absence of gross misfolding. Cellular… Read More

    Jul. 23, 2020

  • Mapping daunorubicin-binding Sites in the ATP-binding cassette transporter MsbA using site-specific …

    Mapping daunorubicin-binding Sites in the ATP-binding cassette transporter MsbA using site-specific …

    ATP-binding cassette (ABC) transporters transduce the free energy of ATP hydrolysis to power the mechanical work of substrate translocation across cell membranes. MsbA is an ABC transporter implicated in trafficking lipid A across the inner membrane of Escherichia coli. It has sequence similarity and overlapping substrate specificity with multidrug ABC… Read More

    Jul. 23, 2020

  • Free-solution label-free detection of alpha-crystallin chaperone interactions by back-scattering int…

    Free-solution label-free detection of alpha-crystallin chaperone interactions by back-scattering int…

    We report the quantitative, label-free analysis of protein-protein interactions in free solution within picoliter volumes using backscatter interferometry (BSI). Changes in the refractive index are measured for solutions introduced on a PDMS microchip allowing determination of forward and reverse rate constants for two-mode binding. Time-dependent BSI traces are directly fit… Read More

    Jul. 23, 2020

  • Disulfide cross-links in the interaction of a cataract-linked alphaA-crystallin mutant with betaB1-c…

    Disulfide cross-links in the interaction of a cataract-linked alphaA-crystallin mutant with betaB1-c…

    A number of alphaA-crystallin mutants are associated with hereditary cataract including cysteine substitution at arginine 49. We report the formation of affinity-driven disulfide bonds in the interaction of alphaA-R49C with betaB1-crystallin. To mimic cysteine thiolation in the lens, betaB1-crystallin was modified by a bimane probe through a disulfide linkage. Our… Read More

    Jul. 23, 2020

  • Role of sequence bias in the topology of the multidrug transporter EmrE.

    Role of sequence bias in the topology of the multidrug transporter EmrE.

    EmrE is the prototype of small multidrug resistance transporters and has emerged as a model of membrane protein evolution. Analysis of the distances separating symmetry-related site-specific spin labels, correlation of topological sequence bias to C-terminal orientation, to membrane insertion efficiency, and to resistance to ethidium bromide collectively demonstrate that EmrE… Read More

    Jul. 23, 2020

  • De novo high-resolution protein structure determination from sparse spin-labeling EPR data.

    De novo high-resolution protein structure determination from sparse spin-labeling EPR data.

    As many key proteins evade crystallization and remain too large for nuclear magnetic resonance spectroscopy, electron paramagnetic resonance (EPR) spectroscopy combined with site-directed spin labeling offers an alternative approach for obtaining structural information. Such information must be translated into geometric restraints to be used in computer simulations. Here, distances between… Read More

    Jul. 23, 2020

  • Structure and orientation of T4 lysozyme bound to the small heat shock protein alpha-crystallin.

    Structure and orientation of T4 lysozyme bound to the small heat shock protein alpha-crystallin.

    We have determined the structural changes that accompany the formation of a stable complex between a destabilized mutant of T4 lysozyme (T4L) and the small heat shock protein alpha-crystallin. Using pairs of fluorescence or spin label probes to fingerprint the T4L tertiary fold, we demonstrate that binding disrupts tertiary packing… Read More

    Jul. 23, 2020

  • Molecular architecture of human prion protein amyloid: a parallel, in-register beta-structure.

    Molecular architecture of human prion protein amyloid: a parallel, in-register beta-structure.

    Transmissible spongiform encephalopathies (TSEs) represent a group of fatal neurodegenerative diseases that are associated with conformational conversion of the normally monomeric and alpha-helical prion protein, PrP(C), to the beta-sheet-rich PrP(Sc). This latter conformer is believed to constitute the main component of the infectious TSE agent. In contrast to high-resolution data… Read More

    Jul. 23, 2020

  • Conformational motion of the ABC transporter MsbA induced by ATP hydrolysis.

    Conformational motion of the ABC transporter MsbA induced by ATP hydrolysis.

    We measured the amplitude of conformational motion in the ATP-binding cassette (ABC) transporter MsbA upon lipopolysaccharide (LPS) binding and following ATP turnover by pulse double electron-electron resonance and fluorescence homotransfer. The distance constraints from both methods reveal large-scale movement of opposite signs in the periplasmic and cytoplasmic part of the… Read More

    Jul. 23, 2020

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Lab news

  • Our recent paper: Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter
  • Mchaourab lab – Overview
  • Sampling the conformational landscapes of transporters and receptors with AlphaFold2
  • Modeling Alternate Conformations with Alphafold2
  • Our work in Science!
  • Molecular Basis of Genetic Diseases program highlights

Hassane’s interview for the EPR newsletter

Molecular Basis of Genetic Diseases

Click here for Program website

https://lab.dev.vanderbilt.edu/mchaourab-lab/wp-content/uploads/sites/49/2020/02/MBGD_aboutvideo.mp4

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