Updates to the RMAP short-read mapping software.
Authors
Smith
AD
Andrew D
,
Chung
WY
Wen-Yu
,
Hodges
E
Emily
,
Kendall
J
Jude
,
Hannon
G
Greg
,
Hicks
J
James
,
Xuan
Z
Zhenyu
,
Zhang
MQ
Michael Q
.
Bioinformatics (Oxford, England). 2009 11 1; 25(21).
2841-2
Bioinformatics (Oxford, England). 2009 11 1; 25(21).
2841-2
Abstract
We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite-treated reads.